ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACAGAGACGAGGCAGAGCATG mismatches: 4 bulges: 0 |
pre-miRNA
ACACAGACACACACAGTAAGAGAGCGAGAGGTGGGTTGGGTTTGATCGGAGACAGAGACGAGGCAGAGCATGGGTAGGGGGCCATCAACAGAATTCCAAA
TTTGATTTCTCGTTTGCTCGCTCACAAAATGGAGGGACTCGCCACAAACACACTCAGGCGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCT
CACCGTCTCCCATCCACCTATCCTCTCTCTTTCTCTCTCTCGTTA
dot-bracket secondary structure
..............((.(((((((.((.((((((((.(((...(((.((((.(((.((.(((((((.(((.(((.(((((((...((((.(((((...))
)))..((((((.((((........))))...))))))...(((.............)))))))..)))))))))).))).))))))).)).))).)))).
....))).))))))))))).))..))))))).))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACACAGACACACACAGTAAGAGAGCGAGAGGTGGGTTGGGTTTGATCGGAGACAGAGACGAGGCAGAGCATGGGTAGGGGGCCATCAACAGAATTCCAAA
TTTGATTTCTCGTTTGCTCGCTCACAAAATGGAGGGACTCGCCACAAACACACTCAGGCGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCT
CACCGTCTCCCATCCACCTATCCTCTCTCTTTCTCTCTCTCGTTA
dot-bracket secondary structure
..............((.(((((((.((.((((((((.(((...(((.((((.(((.((.(((((((.(((.(((.(((((((...((((.(((((...))
)))..((((((.((((........))))...))))))...(((.............)))))))..)))))))))).))).))))))).)).))).)))).
....))).))))))))))).))..))))))).))...........
SIMILARITIES| miRBase zma-MIR408b: 1e-70 PMRD zma-miR408: 9e-16 microPC miR408: 0.0002 | UniProt no hits RFAM MIR408: 1e-89 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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