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Species belonging to selected taxon:
Zea mays
ABOUT THIS RECORD
ID:
MNEST003719
species:
Zea mays
miRNA family:
MIR408
source:
miRNEST
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCACTGCCTCTTCCCTGGCT
miRNA*
ACAGAGACGAGGCAGAGCATG
mismatches:
4
bulges:
0
View larger
pre-miRNA
ACACAGACACACACAGTAAGAGAGCGAGAGGTGGGTTGGGTTTGATCGGAG
ACAGAGACGAGGCAGAGCATG
GGTAGGGGGCCATCAACAGAATTCCAAA
TTTGATTTCTCGTTTGCTCGCTCACAAAATGGAGGGACTCGCCACAAACACACTCAGGCGTTGTTGCTCCCTCCCC
TGCACTGCCTCTTCCCTGGCT
CCT
CACCGTCTCCCATCCACCTATCCTCTCTCTTTCTCTCTCTCGTTA
dot-bracket secondary structure
..............((.(((((((.((.((((((((.(((...(((.((((
.(((.((.(((((((.(((.(
((.(((((((...((((.(((((...))
)))..((((((.((((........))))...))))))...(((.............)))))))..)))))))))).
))).))))))).)).))).))
)).
....))).))))))))))).))..))))))).))...........
SIMILARITIES
miRBase
zma-MIR408b
:
1e-70
PMRD
zma-miR408
:
9e-16
microPC
miR408
:
0.0002
UniProt
no hits
RFAM
MIR408: 1e-89
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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