miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST003729
species: Zea mays
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGGAGACTGCCTACG

miRNA*
 TAGGCAAGTCATCCTTGGCTATC

mismatches: 2
bulges: 2
View larger
pre-miRNA
 TCTCGATTGAGCCTAGCATGAGCAATAGGGGCCACTCAGGCTAGCCAAGGAGACTGCCTACGAACCAACACAAAGGTCCACAATTCTGATCCTTTGTAAA
CAAAGGACATAGGCAAGTCATCCTTGGCTATCAGAGGCAGGCCCTTATTGACATGTAAGGCTTCTGCTCT

dot-bracket secondary structure
........((((((.(((((..(((((((((((.(((.((.(((((((((((((((((((....((...(((((((..((......))..)))))))...
....))...))))).)))).)))))))))))).)))...))))))))))).))))).)))))).......


SIMILARITIES
miRBase zma-MIR169h: 2e-68

PMRD zma-miR169h: 2e-68

microPC miR169: 0.000000009		UniProt no hits

RFAM MIR169_5: 6e-44		most similar mature miRNAs

Identical with: zma-MIR169h from miRBase (MNEST042750)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;