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ABOUT THIS RECORD

ID: MNEST003813
species: Oryza sativa
miRNA family: MIRf1404
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATCCTTGGCTGCATCCCGTT

miRNA*
 CTAGGTGTAGCCAAGGACAGAC

mismatches: 3
bulges: 1
View larger
pre-miRNA
 ATGCTCAAGAGCCAAACGCTAGAAGAAGAGAGCTAGGTGTAGCCAAGGACAGACTTGCCGGCTAACTCCAAGGCGCTTCAGCAAAGCTGAGATTCCCCCA
ATACCAGGAGCCGGCAAGTCATCCTTGGCTGCATCCCGTTCTCCTCCTCACAGCGCATGGCAACCCAGC

dot-bracket secondary structure
..........((((..((((.((.((.((((((..((((((((((((((..((((((((((((..((....((...((((((...))))))...))....
.....)).)))))))))))).))))))))))))))..)))))).)).))..))))..))))........


SIMILARITIES
miRBase osa-MIR169c: 7e-59

PMRD osa-miRf10630-akr: 4e-60

microPC miR169: 6e-47		UniProt no hits

RFAM MIR169_2: 5e-60		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST044916)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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