miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003813
species: Oryza sativa
miRNA family: MIRf1404
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATCCTTGGCTGCATCCCGTT

miRNA*
 CTAGGTGTAGCCAAGGACAGAC

mismatches: 3
bulges: 1
View larger
pre-miRNA
 ATGCTCAAGAGCCAAACGCTAGAAGAAGAGAGCTAGGTGTAGCCAAGGACAGACTTGCCGGCTAACTCCAAGGCGCTTCAGCAAAGCTGAGATTCCCCCA
ATACCAGGAGCCGGCAAGTCATCCTTGGCTGCATCCCGTTCTCCTCCTCACAGCGCATGGCAACCCAGC

dot-bracket secondary structure
..........((((..((((.((.((.((((((..((((((((((((((..((((((((((((..((....((...((((((...))))))...))....
.....)).)))))))))))).))))))))))))))..)))))).)).))..))))..))))........


SIMILARITIES
miRBase osa-MIR169c: 7e-59

PMRD osa-miRf10630-akr: 4e-60

microPC miR169: 6e-47		UniProt no hits

RFAM MIR169_2: 5e-60		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST044916)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;