ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGTTCAATG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 5 bulges: 0 |
pre-miRNA
ATTGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAATGTCTCATACACCTTGTGGTTTTGAGGATGATTTGTGCAAGGTTTTTCAT
TCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCT
dot-bracket secondary structure
..........((((((((((....((((((.((((((..(((((((((...((((((.(((...)))((....((((((((.((......))....))).
)))))....)).))))))...)))))))))..)))))).)))))))))))))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATTGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAATGTCTCATACACCTTGTGGTTTTGAGGATGATTTGTGCAAGGTTTTTCAT
TCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCT
dot-bracket secondary structure
..........((((((((((....((((((.((((((..(((((((((...((((((.(((...)))((....((((((((.((......))....))).
)))))....)).))))))...)))))))))..)))))).)))))))))))))))).............
SIMILARITIES| miRBase osa-MIR166a: 2e-71 PMRD osa-miR166a: 2e-71 microPC miR166: 2e-56 | UniProt no hits RFAM mir-166: 1e-60 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST045340) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
