miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004538
species: Oryza sativa
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAATGTTGTCTGGTTCAATG

miRNA*
TCGGACCAGGCTTCATTCCCC

mismatches: 5
bulges: 0

View larger
pre-miRNA
ATTGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAATGTCTCATACACCTTGTGGTTTTGAGGATGATTTGTGCAAGGTTTTTCAT
TCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCT


dot-bracket secondary structure
..........((((((((((....((((((.((((((..(((((((((...((((((.(((...)))((....((((((((.((......))....))).
)))))....)).))))))...)))))))))..)))))).)))))))))))))))).............



SIMILARITIES
miRBase osa-MIR166a: 2e-71

PMRD osa-miR166a: 2e-71

microPC miR166: 2e-56
UniProt no hits

RFAM mir-166: 1e-60
most similar mature miRNAs

Identical with: miR166 from microPC (MNEST045340)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;