ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGACTTACATTGTGAAACGG miRNA* GTTTCACAATGTAAGTCATTC mismatches: 0 bulges: 0 |
pre-miRNA
AAGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGCTAATGAATCTATATAAATATAGAATGACTTACATTGTGA
AACGGGAGGAAGTAA
dot-bracket secondary structure
...((((.((((((((((((((((((((((((((((...........((((((..........))))))...........))))))))))))))))))))
))).))))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGCTAATGAATCTATATAAATATAGAATGACTTACATTGTGA
AACGGGAGGAAGTAA
dot-bracket secondary structure
...((((.((((((((((((((((((((((((((((...........((((((..........))))))...........))))))))))))))))))))
))).))))).)))).
SIMILARITIES| miRBase osa-MIR809d: 1e-31 PMRD osa-miR809d: 1e-31 microPC miR809: 0.000000000002 | UniProt sp|Q6K1U0|P2C17_ORYSJ: 0.001 RFAM MIR1122: 6e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
