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ABOUT THIS RECORD
ID:
MNEST004575
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATATAAGTCATTCTAGCATTT
miRNA*
ATGATAGAATGACTTACATTG
mismatches:
2
bulges:
0
View larger
pre-miRNA
AACTACTTCATCCGTTTCACA
ATATAAGTCATTCTAGCATTT
TCCATATTCGTATTAATCTTAACGAATCTAAATAGATATATGTCTAGATTCATTAACA
TCAATATAAATATAGAAA
ATGATAGAATGACTTACATTG
TGAAACGGAGGAGGGAGT
dot-bracket secondary structure
.(((.((((.(((((((((((
((.((((((((((((.(((((
((.(((((.(((((.((.((((.(((((((.(((......))).))))))).)))).)
).))))).))))).))))
))).)))))))))))).))))
))))))))).)))).)))
SIMILARITIES
miRBase
osa-MIR808
:
5e-38
PMRD
osa-miR808
:
5e-38
microPC
miR809
:
6e-16
UniProt
sp|Q6K1U0|P2C17_ORYSJ: 0.0007
RFAM
MIR1122: 1e-44
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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