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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST004575
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATATAAGTCATTCTAGCATTT
miRNA*
ATGATAGAATGACTTACATTG
mismatches:
2
bulges:
0
View larger
pre-miRNA
AACTACTTCATCCGTTTCACA
ATATAAGTCATTCTAGCATTT
TCCATATTCGTATTAATCTTAACGAATCTAAATAGATATATGTCTAGATTCATTAACA
TCAATATAAATATAGAAA
ATGATAGAATGACTTACATTG
TGAAACGGAGGAGGGAGT
dot-bracket secondary structure
.(((.((((.(((((((((((
((.((((((((((((.(((((
((.(((((.(((((.((.((((.(((((((.(((......))).))))))).)))).)
).))))).))))).))))
))).)))))))))))).))))
))))))))).)))).)))
SIMILARITIES
miRBase
osa-MIR808
:
5e-38
PMRD
osa-miR808
:
5e-38
microPC
miR809
:
6e-16
UniProt
sp|Q6K1U0|P2C17_ORYSJ: 0.0007
RFAM
MIR1122: 1e-44
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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