ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACATTGTGAAACGGAGGGA miRNA* CCTCCGTTTCACAATATAAGT mismatches: 1 bulges: 0 |
pre-miRNA
CTTGCTACTTCCTCCGTTTCACAATATAAGTCATTCTAGCATATCCCACATTCATATTGATGTTAATGAATCTAAACATCAATATGAATGTGGAAAATGC
TAAAATGACTTACATTGTGAAACGGAGGGAGTAGCAA
dot-bracket secondary structure
.((((((((((((((((((((((((.(((((((((.((((((...(((((((((((((((((((..........)))))))))))))))))))...))))
)).))))))))).))))))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTGCTACTTCCTCCGTTTCACAATATAAGTCATTCTAGCATATCCCACATTCATATTGATGTTAATGAATCTAAACATCAATATGAATGTGGAAAATGC
TAAAATGACTTACATTGTGAAACGGAGGGAGTAGCAA
dot-bracket secondary structure
.((((((((((((((((((((((((.(((((((((.((((((...(((((((((((((((((((..........)))))))))))))))))))...))))
)).))))))))).))))))))))))))))))))))))
SIMILARITIES| miRBase osa-MIR809b: 2e-34 PMRD osa-miR809b: 2e-34 microPC miR809: 0.0000000000001 | UniProt no hits RFAM MIR1122: 1e-69 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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