ABOUT THIS RECORDspecies: Mus musculus
miRNA family: miR-1930
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCTCCATAGTACCTGCAGCGT miRNA* GGTGCAGTTACTGTGGCTGTGG mismatches: 4 bulges: 0 |
pre-miRNA
CTGGACCACATGCCCACGGTCACCTCCATAGTACCTGCAGCGTGCTTGACTTTCTCTATGGTGCAGTTACTGTGGCTGTGGCTGTGTTCGTGCCTCAGA
dot-bracket secondary structure
((((....((((..(((((((((..((((((((.(((((.((((...((...))..)))).))))).))))))))..)))))))))..))))..)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
CTGGACCACATGCCCACGGTCACCTCCATAGTACCTGCAGCGTGCTTGACTTTCTCTATGGTGCAGTTACTGTGGCTGTGGCTGTGTTCGTGCCTCAGA
dot-bracket secondary structure
((((....((((..(((((((((..((((((((.(((((.((((...((...))..)))).))))).))))))))..)))))))))..))))..)))).
SIMILARITIES| miRBase mmu-mir-1930: 2e-42 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: mmu-mir-1930 from miRBase (MNEST032434) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
