ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: miR-1587
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGCTGGGCTGGGCTGGGCTG miRNA* GCTTTGATAGCATCAGCCCGG mismatches: 4 bulges: 2 |
pre-miRNA
GAGAAGTGGCTGGGCTGGGCTGGGCTGGGCTGTTCTTACAAGCACAGTACAGAAGCGGGAGCTAGTGAATCCTGCCAGTGTGAAGCAAGCTTTGATAGCA
TCAGCCCGGAGACTTCC
dot-bracket secondary structure
..(((((..(((((((((((((....(((((...(((....((((.........((((((.........))))))..)))).)))..)))))...)))).
)))))))))..))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGAAGTGGCTGGGCTGGGCTGGGCTGGGCTGTTCTTACAAGCACAGTACAGAAGCGGGAGCTAGTGAATCCTGCCAGTGTGAAGCAAGCTTTGATAGCA
TCAGCCCGGAGACTTCC
dot-bracket secondary structure
..(((((..(((((((((((((....(((((...(((....((((.........((((((.........))))))..)))).)))..)))))...)))).
)))))))))..))))).
SIMILARITIES| miRBase hsa-mir-3620: 0.0004 PMRD no hits microPC no hits | UniProt sp|Q9WTZ3|MBTP1_RAT: 0.000003 RFAM mir-692: 0.000007 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
