miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Macaca fascicularis, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Peromyscus polionotus subgriseus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST005769
species: Rattus norvegicus
miRNA family: miR-1587
source: miRNEST

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGGCTGGGCTGGGCTGGGCTG

miRNA*
 GCTTTGATAGCATCAGCCCGG

mismatches: 4
bulges: 2
View larger
pre-miRNA
 GAGAAGTGGCTGGGCTGGGCTGGGCTGGGCTGTTCTTACAAGCACAGTACAGAAGCGGGAGCTAGTGAATCCTGCCAGTGTGAAGCAAGCTTTGATAGCA
TCAGCCCGGAGACTTCC

dot-bracket secondary structure
..(((((..(((((((((((((....(((((...(((....((((.........((((((.........))))))..)))).)))..)))))...)))).
)))))))))..))))).


SIMILARITIES
miRBase hsa-mir-3620: 0.0004

PMRD no hits

microPC no hits		UniProt sp|Q9WTZ3|MBTP1_RAT: 0.000003

RFAM mir-692: 0.000007		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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