ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1135
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCGACAAGTAATTCGGAAC miRNA* TCCAAATTACTCGTCGCTAAA mismatches: 4 bulges: 0 |
pre-miRNA
CATTGCCATGTACTCCCTCCGTTCCAAATTACTCGTCGCTAAAATGGATGTATCTAGAATTAAAATACATCTAGATACATCCATACGTGCGACAAGTAAT
TCGGAACGGAGGGAGTATAATAGGAG
dot-bracket secondary structure
.....((.(((((((((((((((((.(((((((.(((((....(((((((((((((((...........)))))))))))))))....))))).))))))
).)))))))))))))))))...))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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CATTGCCATGTACTCCCTCCGTTCCAAATTACTCGTCGCTAAAATGGATGTATCTAGAATTAAAATACATCTAGATACATCCATACGTGCGACAAGTAAT
TCGGAACGGAGGGAGTATAATAGGAG
dot-bracket secondary structure
.....((.(((((((((((((((((.(((((((.(((((....(((((((((((((((...........)))))))))))))))....))))).))))))
).)))))))))))))))))...))..
SIMILARITIES| miRBase tae-MIR1136: 1e-41 PMRD tae-miR1136: 1e-41 microPC miR1135: 1e-47 | UniProt no hits RFAM MIR1122: 7e-43 | most similar mature miRNAs |
Identical with: miR1135 from microPC (MNEST045862) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
