ABOUT THIS RECORDspecies: Oryzias latipes
miRNA family: mir-153
source: miRNEST
Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCATAGTCACAAAAATGAGC miRNA* CATTTTTGTGGTTTGCAGCT mismatches: 3 bulges: 1 |
pre-miRNA
TCTTTGAACATCTCCCAGTGTCATTTTTGTGGTTTGCAGCTAGTACTCTGGCTCCAGTTGCATAGTCACAAAAATGAGCATTGGCAGGTGTGACTGG
dot-bracket secondary structure
.......((((((.((((((((((((((((((..((((((((((......)))..)))))))...)))))))))))).)))))).))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TCTTTGAACATCTCCCAGTGTCATTTTTGTGGTTTGCAGCTAGTACTCTGGCTCCAGTTGCATAGTCACAAAAATGAGCATTGGCAGGTGTGACTGG
dot-bracket secondary structure
.......((((((.((((((((((((((((((..((((((((((......)))..)))))))...)))))))))))).)))))).))))))......
SIMILARITIES| miRBase fru-mir-153b: 1e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-153: 2e-42 | most similar mature miRNAs |
Identical with: tni-mir-153b from miRBase (MNEST034756) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
