ABOUT THIS RECORDspecies: Canis lupus familiaris
miRNA family: miR-3195
source: miRNEST
Taxonomy by NCBI:
Canis lupus familiaris Canis lupus Canis Canidae Caniformia Carnivora Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCGCCGGGCCCGGGTCTTCC miRNA* AAGACCCACTCCCTGGCGCCGCT mismatches: 3 bulges: 2 |
pre-miRNA
TGTGGCGTACGGAAGACCCACTCCCTGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCATTCCGTGGACGGTGTGAGGCCGGTAGCGGCC
CCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGG
dot-bracket secondary structure
..((((....(((((((((....((((((((.(((....(((((((.....((.((.....))(((((((.(((....))).))).))))))....))))
))))))))))))))...)))))))))....)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTGGCGTACGGAAGACCCACTCCCTGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCATTCCGTGGACGGTGTGAGGCCGGTAGCGGCC
CCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGG
dot-bracket secondary structure
..((((....(((((((((....((((((((.(((....(((((((.....((.((.....))(((((((.(((....))).))).))))))....))))
))))))))))))))...)))))))))....)))).
SIMILARITIES| miRBase mmu-mir-5105: 5e-28 PMRD no hits microPC no hits | UniProt no hits RFAM SSU_rRNA_eukarya: 6e-62 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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