miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Sus scrofa, Bos taurus, Canis lupus familiaris, Ovis aries, Ursus americanus, Equus caballus, Bos indicus, Bos sp., Capra hircus



ABOUT THIS RECORD

ID: MNEST006917
species: Canis lupus familiaris
miRNA family: miR-3195
source: miRNEST

Taxonomy by NCBI:
Canis lupus familiaris Canis lupus Canis Canidae Caniformia Carnivora Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGCGCCGGGCCCGGGTCTTCC

miRNA*
AAGACCCACTCCCTGGCGCCGCT

mismatches: 3
bulges: 2

View larger
pre-miRNA
TGTGGCGTACGGAAGACCCACTCCCTGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCATTCCGTGGACGGTGTGAGGCCGGTAGCGGCC
CCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGG


dot-bracket secondary structure
..((((....(((((((((....((((((((.(((....(((((((.....((.((.....))(((((((.(((....))).))).))))))....))))
))))))))))))))...)))))))))....)))).



SIMILARITIES
miRBase mmu-mir-5105: 5e-28

PMRD no hits

microPC no hits
UniProt no hits

RFAM SSU_rRNA_eukarya: 6e-62
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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