ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGACCAGGCTTCATTCCC miRNA* GAATGACGTGTGGCCCGAAGC mismatches: 5 bulges: 0 |
pre-miRNA
TTATGTGACATTGCCGTGAGGAATGACGTGTGGCCCGAAGCCATATCTTGGGTTGCCTTGATGAAGCTCCGGACCAGGCTTCATTCCCCTCGGCAGAGTTG
CAACAAGT
dot-bracket secondary structure
)..((((((.((((((...(((((((.((.(((.(((.(((..((((..(((...))).))))..))).))).))).)).)))))))...)))))).))))
))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TTATGTGACATTGCCGTGAGGAATGACGTGTGGCCCGAAGCCATATCTTGGGTTGCCTTGATGAAGCTCCGGACCAGGCTTCATTCCCCTCGGCAGAGTTG
CAACAAGT
dot-bracket secondary structure
)..((((((.((((((...(((((((.((.(((.(((.(((..((((..(((...))).))))..))).))).))).)).)))))))...)))))).))))
))......
SIMILARITIES| miRBase ppt-MIR166j: 1.0E-56 PMRD ppt-miR166j: 1.0E-56 microPC miR166: 8.0E-5 | UniProt no hits RFAM 6mir-166: 6.0E-40 | most similar mature miRNAs |
Identical with: ppt-MIR166j from miRBase (MNEST039473), ppt-miR166j from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
