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Species belonging to selected taxon:

Physcomitrella patens



ABOUT THIS RECORD

ID: MNEST006974
species: Physcomitrella patens
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCGGACCAGGCTTCATTCCC

miRNA*
GAATGACGTGTGGCCCGAAGC

mismatches: 5
bulges: 0

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pre-miRNA
TATGTGACATTGCCGTGAGGAATGACGTGTGGCCCGAAGCCATATCTTGGGTTGCCTTGATGAAGCTCCGGACCAGGCTTCATTCCCCTCGGCAGAGTTG
CAACAAGT


dot-bracket secondary structure
..((((((.((((((...(((((((.((.(((.(((.(((..((((..(((...))).))))..))).))).))).)).)))))))...)))))).))))
))......



SIMILARITIES
miRBase ppt-MIR166j: 1e-56

PMRD ppt-miR166j: 1e-56

microPC miR166: 0.00008
UniProt no hits

RFAM mir-166: 6e-40
most similar mature miRNAs

Identical with: ppt-MIR166j from miRBase (MNEST039473)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence





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