ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1023
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGAATTGGAGAGAGTGCAT miRNA* ACACTCTCTCCATTTCTCTAC mismatches: 3 bulges: 0 |
pre-miRNA
GACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAG
GAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGAC
dot-bracket secondary structure
....(((((((((((.(((((..(((((((((((.((((((.(((.((.(((..(((((((((((((((........)))))))))))))))...).)).
))..))).)))))).)))))))))))..))))))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
GACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAG
GAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGAC
dot-bracket secondary structure
....(((((((((((.(((((..(((((((((((.((((((.(((.((.(((..(((((((((((((((........)))))))))))))))...).)).
))..))).)))))).)))))))))))..))))))))))))))))....
SIMILARITIES| miRBase ppt-MIR1023a: 2e-80 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1023: 3e-79 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
