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Species belonging to selected taxon:
Physcomitrella patens
ABOUT THIS RECORD
ID:
MNEST006987
species:
Physcomitrella patens
miRNA family:
MIR1023
source:
miRNEST
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAGAATTGGAGAGAGTGCAT
miRNA*
ACACTCTCTCCATTTCTCTAC
mismatches:
3
bulges:
0
View larger
pre-miRNA
GACCACCTTGCAGTTTCATGGC
ACACTCTCTCCATTTCTCTAC
CGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGATCGATGGTCAG
GAGTTGGA
AGAGAATTGGAGAGAGTGCAT
TGTGAATTGCGGGGTTGAC
dot-bracket secondary structure
....(((((((((((.(((((.
.(((((((((((.((((((.(
((.((.(((..(((((((((((((((........)))))))))))))))...).)).
))..))).
)))))).)))))))))))..)
)))))))))))))))....
SIMILARITIES
miRBase
ppt-MIR1023a
:
2e-80
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
MIR1023: 3e-79
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record
deep sequencing data evidence