ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCCTCA miRNA* AGGATGATGAAGATGATGAGC mismatches: 1 bulges: 0 |
pre-miRNA
CGTGAGGATGATGAAGATGATGAGCAAGAAGCCAGATTCCATTATCAAAGCTTGCGGCACCACCATCACCACCCTCATCATCATCATCATCCTCAG
dot-bracket secondary structure
..((((((((((((.(((((((((....((((..(((......)))...))))..((...........))...))))))))).)))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
CGTGAGGATGATGAAGATGATGAGCAAGAAGCCAGATTCCATTATCAAAGCTTGCGGCACCACCATCACCACCCTCATCATCATCATCATCCTCAG
dot-bracket secondary structure
..((((((((((((.(((((((((....((((..(((......)))...))))..((...........))...))))))))).)))))))))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 3e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
