ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCATCAACTGAAT miRNA* TCGCTTGGTGCAGGTCGGGAC mismatches: 2 bulges: 0 |
pre-miRNA
CGGCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGCCAGCGTACCGGTAAAAACTAATTTTTTA
CATGTTGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGACTGCG
dot-bracket secondary structure
(((.((((.(((((.((((((((((.((((((((((..(((((((((((....(((((((((.((....)).)))).)))))(((((((.....))))))
).)))))))...))))..))..)))))))).)))))))))).))))).)))).)))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGGCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGCCAGCGTACCGGTAAAAACTAATTTTTTA
CATGTTGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGACTGCG
dot-bracket secondary structure
(((.((((.(((((.((((((((((.((((((((((..(((((((((((....(((((((((.((....)).)))).)))))(((((((.....))))))
).)))))))...))))..))..)))))))).)))))))))).))))).)))).)))..
SIMILARITIES| miRBase crt-MIR168: 0.0000001 PMRD stu-miR168: 9e-49 microPC miR168: 5e-72 | UniProt no hits RFAM MIR168: 0.000002 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST044885) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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