ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCATCAACTGAAT miRNA* TCGCTTGGTGCAGGTCGGGAC mismatches: 2 bulges: 0 |
pre-miRNA
TTTCTGTTGCGGCGGCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGGCAGCTTACCGGTAAAA
ACTTTTTTTTTTTACATGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGACTGCGGTGAAATTT
dot-bracket secondary structure
......((((.((((.((((.(((((.((((((((((.((((((((((..(((((.(((((....(((((((((.((....)).)))).)))))((((((
(.......))))))).))).)))))))..))..)))))))).)))))))))).))))).)))).)))).)))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTCTGTTGCGGCGGCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGGCAGCTTACCGGTAAAA
ACTTTTTTTTTTTACATGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGACTGCGGTGAAATTT
dot-bracket secondary structure
......((((.((((.((((.(((((.((((((((((.((((((((((..(((((.(((((....(((((((((.((....)).)))).)))))((((((
(.......))))))).))).)))))))..))..)))))))).)))))))))).))))).)))).)))).)))).....
SIMILARITIES| miRBase tcc-MIR168: 0.0000000006 PMRD stu-miR168: 1e-51 microPC miR168: 1e-51 | UniProt no hits RFAM MIR168: 0.0000000007 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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