ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAC miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 2 bulges: 0 |
pre-miRNA
TTATTTCTGTTGCGGCGGCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGGCAGCTTACCGGTAA
AAACTTTTTTTTTTTACATGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGACTGCGGTGAAATTTGT
dot-bracket secondary structure
)........((((.((((.((((.(((((.((((((((((.((((((((((..(((((.(((((....(((((((((.((....)).)))).)))))((((
(((.......))))))).))).)))))))..))..)))))))).)))))))))).))))).)))).)))).)))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTATTTCTGTTGCGGCGGCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGGCAGCTTACCGGTAA
AAACTTTTTTTTTTTACATGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGACTGCGGTGAAATTTGT
dot-bracket secondary structure
)........((((.((((.((((.(((((.((((((((((.((((((((((..(((((.(((((....(((((((((.((....)).)))).)))))((((
(((.......))))))).))).)))))))..))..)))))))).)))))))))).))))).)))).)))).)))).......
SIMILARITIES| miRBase tcc-MIR168: 6.0E-10 PMRD stu-miR168: 1.0E-51 microPC miR168: 1.0E-51 | UniProt no hits RFAM 8MIR168: 7.0E-10 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
