ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTTCTCATTCTGTCAGC mismatches: 0 bulges: 2 |
pre-miRNA
AGAATCAAGACTGACAGAAGAGAGTGAGCACACGCAGTCGAATTGTATAAACATTTATACAATTGTCATTTGCGTGTGCTCACTTCTCATTCTGTCAGCT
CTCTCAG
dot-bracket secondary structure
.......((((((((((((((((((((((((((((((..(((((((((((....)))))))))..))..)))))))))))))).)))).))))))))).)
)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAATCAAGACTGACAGAAGAGAGTGAGCACACGCAGTCGAATTGTATAAACATTTATACAATTGTCATTTGCGTGTGCTCACTTCTCATTCTGTCAGCT
CTCTCAG
dot-bracket secondary structure
.......((((((((((((((((((((((((((((((..(((((((((((....)))))))))..))..)))))))))))))).)))).))))))))).)
)).....
SIMILARITIES| miRBase tcc-MIR156c: 0.0000000003 PMRD stu-miR156a: 1e-43 microPC miR156: 1e-43 | UniProt no hits RFAM mir-156: 0.0000004 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST046134) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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