ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATCTTGATGGTGCTGCAC miRNA* GCAGCATCATCAAGATTCTCA mismatches: 2 bulges: 0 |
pre-miRNA
GAATTAAAGAATCAAGTCATCAATTTGCCAATGCAGCATCATCAAGATTCTCATGTATTCAAAAATTGGGCATATTTCATTTCATAGTCCATATTTTCTA
TGTGAATCTTGATGGTGCTGCACTAGCAAGCAACAACTGTATGTTGAGGCAA
dot-bracket secondary structure
........((......))......(((((..(((((((((((((((((((.((((.....((((..(((((...............)))))..)))).))
)).))))))))))))))))))).(((((.(((.....))).))))).)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAATTAAAGAATCAAGTCATCAATTTGCCAATGCAGCATCATCAAGATTCTCATGTATTCAAAAATTGGGCATATTTCATTTCATAGTCCATATTTTCTA
TGTGAATCTTGATGGTGCTGCACTAGCAAGCAACAACTGTATGTTGAGGCAA
dot-bracket secondary structure
........((......))......(((((..(((((((((((((((((((.((((.....((((..(((((...............)))))..)))).))
)).))))))))))))))))))).(((((.(((.....))).))))).)))))
SIMILARITIES| miRBase bdi-MIR172a: 0.0000001 PMRD stu-miR172: 1e-47 microPC miR172: 0.000002 | UniProt no hits RFAM mir-172: 0.0000006 | most similar mature miRNAs |
Identical with: stu-miR172 from PMRD (MNEST054668) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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