ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTCCAAGAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
ATAGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTCTTGCTAAATTTTGATCTCTAAATTGATAATTTTGAGATGAAATTTTTGAAGCTATGAAAGTCCA
AGAAAGCTGTGGGAAAAGATGGCA
dot-bracket secondary structure
)..(((((..((((((((((((((((((.((((..((..((((((.(((.(((((.(((((...))))).))))).))).)))...)))...)))))).))
))))))))))))))))..))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATAGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTCTTGCTAAATTTTGATCTCTAAATTGATAATTTTGAGATGAAATTTTTGAAGCTATGAAAGTCCA
AGAAAGCTGTGGGAAAAGATGGCA
dot-bracket secondary structure
)..(((((..((((((((((((((((((.((((..((..((((((.(((.(((((.(((((...))))).))))).))).)))...)))...)))))).))
))))))))))))))))..))))).
SIMILARITIES| miRBase vvi-MIR396b: 7.0E-12 PMRD vvi-miR396b: 7.0E-12 microPC miR396: 1.0E-53 | UniProt no hits RFAM 6MIR396: 2.0E-12 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST046596) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
