ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCATC mismatches: 0 bulges: 1 |
pre-miRNA
AATTGATAGGAAGAAAGGTTGGTGATAATTGTTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAGCAAAAGCATCTCACTTCATTT
GTGCTCTCTATGCTTCTGTCATCACCTTCGCCCTCTTTCGTTTTTTCTTTTT
dot-bracket secondary structure
....((.((((.((((((..(((((....((.((((((((((((((((((((.((((((((.(((((................))))).)))..))))).
))))))))))).))))))))).))...))))).)))))).)))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATTGATAGGAAGAAAGGTTGGTGATAATTGTTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAGCAAAAGCATCTCACTTCATTT
GTGCTCTCTATGCTTCTGTCATCACCTTCGCCCTCTTTCGTTTTTTCTTTTT
dot-bracket secondary structure
....((.((((.((((((..(((((....((.((((((((((((((((((((.((((((((.(((((................))))).)))..))))).
))))))))))).))))))))).))...))))).)))))).)))).)).....
SIMILARITIES| miRBase sly-MIR156a: 3e-30 PMRD stu-miR157a: 2e-46 microPC miR157: 8e-46 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR157 from microPC (MNEST045968) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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