ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR1030
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTGCATTTGCACCTGCACCT miRNA* GTGTTGGTGCTCATGCAGACA mismatches: 3 bulges: 0 |
pre-miRNA
GTATTTCTGTAAACAAGAGACATATTTTTATCTGCATTTGCACCTGCACCTTAGTGAACGAATTTGTTAGCATATAATTCGTGCAGAAAGGTGTTGGTGCT
CATGCAGACAAAAATGGTATCTTGGCCTTCCATTGG
dot-bracket secondary structure
)............(((((.((.(((((((.(((((((..(((((.(((((((..((.(((((((...((...)).))))))).))..))))))).))))).
.))))))).))))))))).)))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTATTTCTGTAAACAAGAGACATATTTTTATCTGCATTTGCACCTGCACCTTAGTGAACGAATTTGTTAGCATATAATTCGTGCAGAAAGGTGTTGGTGCT
CATGCAGACAAAAATGGTATCTTGGCCTTCCATTGG
dot-bracket secondary structure
)............(((((.((.(((((((.(((((((..(((((.(((((((..((.(((((((...((...)).))))))).))..))))))).))))).
.))))))).))))))))).)))))............
SIMILARITIES| miRBase ptc-MIR530a: 3.0E-8 PMRD ptc-miRf11026-akr: 3.0E-8 microPC miR1030: 3.0E-5 | UniProt no hits RFAM 0MIR530: 5.0E-7 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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