ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR827
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATAGATGACCATCAACAAACA miRNA* TTTGTTGATGTTCATCTAATC mismatches: 2 bulges: 0 |
pre-miRNA
TTAACATGAAGTGATGAAGATGTTTGTTGATGTTCATCTAATCATGGCATATTAATGGTTGCAAAAACTATGCCAAATGATATGATGAATAGATGACCAT
CAACAAACAAATTCATAACTACACAATT
dot-bracket secondary structure
......((.(((.(((((..((((((((((((.(((((((.((((..(((((((((((((.....))))))......))))))))))).))))))).)))
)))))))))..))))).))).)).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTAACATGAAGTGATGAAGATGTTTGTTGATGTTCATCTAATCATGGCATATTAATGGTTGCAAAAACTATGCCAAATGATATGATGAATAGATGACCAT
CAACAAACAAATTCATAACTACACAATT
dot-bracket secondary structure
......((.(((.(((((..((((((((((((.(((((((.((((..(((((((((((((.....))))))......))))))))))).))))))).)))
)))))))))..))))).))).)).....
SIMILARITIES| miRBase csi-MIR827: 0.000006 PMRD no hits microPC miR827: 4e-44 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR827 from microPC (MNEST044800) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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