ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR390
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCACC miRNA* CGCTATCCATCTTGAGTTTTA mismatches: 4 bulges: 0 |
pre-miRNA
AATTGGTATAGAGAATCTATAAAGCTCAGGAGGGATAGCACCATGAATACATCTTAATAACTATCTATAGCGCTATCCATCTTGAGTTTTATGGCTTCTT
CATGCTCGC
dot-bracket secondary structure
....(((((.(((((.(((((((((((((((.(((((((................................))))))).))))))))))))))).)))))
.)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATTGGTATAGAGAATCTATAAAGCTCAGGAGGGATAGCACCATGAATACATCTTAATAACTATCTATAGCGCTATCCATCTTGAGTTTTATGGCTTCTT
CATGCTCGC
dot-bracket secondary structure
....(((((.(((((.(((((((((((((((.(((((((................................))))))).))))))))))))))).)))))
.)))))...
SIMILARITIES| miRBase aly-MIR390b: 0.000000005 PMRD gma-miR390b: 0.00000002 microPC miR390: 7e-33 | UniProt no hits RFAM MIR390: 0.0000001 | most similar mature miRNAs |
Identical with: miR390 from microPC (MNEST045082) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
