ABOUT THIS RECORDspecies: Gadus morhua
miRNA family: mir-133
source: miRNEST
Taxonomy by NCBI:
Gadus morhua Gadus Gadidae Gadiformes Paracanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCTGGTTGAAGGGGACCAA miRNA* GGTTCCATTTTACCAGCTTTA mismatches: 4 bulges: 0 |
pre-miRNA
AAGCATAGCTACAGCTGGTTGAAGGGGACCAAATCCATTCAAGAGGTGATATGGTTCCATTTTACCAGCTTTAGCAAAGCA
dot-bracket secondary structure
..((...((((.(((((((.(((.(((((((.(((...((....)).))).))))))).))).))))))).))))...)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGCATAGCTACAGCTGGTTGAAGGGGACCAAATCCATTCAAGAGGTGATATGGTTCCATTTTACCAGCTTTAGCAAAGCA
dot-bracket secondary structure
..((...((((.(((((((.(((.(((((((.(((...((....)).))).))))))).))).))))))).))))...)).
SIMILARITIES| miRBase dre-mir-133a-1: 5e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 5e-24 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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