ABOUT THIS RECORDspecies: Vigna unguiculata
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCAT miRNA* GTAGCATCATCAAGATTCA mismatches: 0 bulges: 2 |
pre-miRNA
ATCACAGTCGTTGTTTGCGGATGTAGCATCATCAAGATTCACATGCAAACGAAGGTGGATGGGACTGTGATGCAATCTAACCGCTCGTCTTTTTGATGTGA
GAATCTTGATGATGCTGCATCAGCCATAAACGACTTTA
dot-bracket secondary structure
)....(((((((....((.(((((((((((((((((((((((((.((((.((.(((((...(((.(((...))).)))..)))))..))..))))))))))
..))))))))))))))))))).))....)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCACAGTCGTTGTTTGCGGATGTAGCATCATCAAGATTCACATGCAAACGAAGGTGGATGGGACTGTGATGCAATCTAACCGCTCGTCTTTTTGATGTGA
GAATCTTGATGATGCTGCATCAGCCATAAACGACTTTA
dot-bracket secondary structure
)....(((((((....((.(((((((((((((((((((((((((.((((.((.(((((...(((.(((...))).)))..)))))..))..))))))))))
..))))))))))))))))))).))....)))))))...
SIMILARITIES| miRBase gma-MIR172b: 4.0E-38 PMRD gma-miR172b: 4.0E-38 microPC miR172: 7.0E-6 | UniProt no hits RFAM 2mir-172: 9.0E-12 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
