ABOUT THIS RECORDspecies: Vigna unguiculata
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
TGGAGATGAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAATTTGGCTGTGGAAGAACACAAAGCAAGAATCGGTCGATAAACCTCTGC
ATCCAGCGCTCACTTTGCCTCTCT
dot-bracket secondary structure
...(((.((((((((((..(((((.((((.((((.(((((((..(((.((..((((...((......)).)))).)).)))..))))))).)))).))))
.))))).....)))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGAGATGAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAATTTGGCTGTGGAAGAACACAAAGCAAGAATCGGTCGATAAACCTCTGC
ATCCAGCGCTCACTTTGCCTCTCT
dot-bracket secondary structure
...(((.((((((((((..(((((.((((.((((.(((((((..(((.((..((((...((......)).)))).)).)))..))))))).)))).))))
.))))).....)))))))))))))
SIMILARITIES| miRBase vvi-MIR162: 1e-22 PMRD vvi-miR162: 1e-22 microPC miR162: 4e-44 | UniProt no hits RFAM MIR162_2: 8e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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