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ABOUT THIS RECORD
ID:
MNEST007611
species:
Litopenaeus vannamei
miRNA family:
miR-548o
source:
miRNEST
Taxonomy by NCBI:
Litopenaeus vannamei
Litopenaeus
Penaeidae
Penaeoidea
Dendrobranchiata
Decapoda
Eucarida
Eumalacostraca
Malacostraca
Crustacea
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACAGAACTGCAGTTACTTTTT
miRNA*
GAGGAACTGCATTTTTGGCA
mismatches:
2
bulges:
1
View larger
pre-miRNA
TCATCCTTTTTCTTTGCTTTTGCTGTGATGG
ACAGAACTGCAGTTACTTTTT
CTGCAACCTCTTTCTTCTTTTCCTCTAGAGGTGCTGGGTATCCGTAAG
TGGATGGCTTTGCATTGGA
GAGGAACTGCATTTTTGGCA
TTTTCAGTTCAGAGTTCAGCCCAATAAG
dot-bracket secondary structure
...............(((((.((((.((((.
.(((((.(((((((.((((((
(.(((((((((...............))))))...((.(((((.....
.))))).)).)))...)))
))))))))))).))))).))
))..))))..))))).............
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|O88761|PSMD1_RAT: 0.00000001
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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