ABOUT THIS RECORDspecies: Trichosurus vulpecula
miRNA family: mir-1271
source: miRNEST
Taxonomy by NCBI:
Trichosurus vulpecula Trichosurus Phalangeridae Diprotodontia Metatheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGGCACGTAGTAAGCACTT miRNA* ATTCCTTCTATGTGCCAGGCA mismatches: 3 bulges: 2 |
pre-miRNA
TCAACAAAGTGCCTGGCACGTAGTAAGCACTTAATAAATTTTGATTGATTGATTGAGTTCTGAACAAACTTCCAACCAATGAGCAGACCTTCATAATAAG
GAAGAGTTAAACCATAGCAACTGATGCAATAGTCACTCAAAACATTTTTATTAAATTCCTTCTATGTGCCAGGCATTGTGCTT
dot-bracket secondary structure
....((.((((((((((((((((.(((...((((((((((((((.((((((..((.(((...(((...(((((.....(((((......))))).....)
)))).))).)))))..(((.....)))..)))))).))))))....))))))))....))))))))))))))))))).))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCAACAAAGTGCCTGGCACGTAGTAAGCACTTAATAAATTTTGATTGATTGATTGAGTTCTGAACAAACTTCCAACCAATGAGCAGACCTTCATAATAAG
GAAGAGTTAAACCATAGCAACTGATGCAATAGTCACTCAAAACATTTTTATTAAATTCCTTCTATGTGCCAGGCATTGTGCTT
dot-bracket secondary structure
....((.((((((((((((((((.(((...((((((((((((((.((((((..((.(((...(((...(((((.....(((((......))))).....)
)))).))).)))))..(((.....)))..)))))).))))))....))))))))....))))))))))))))))))).))...
SIMILARITIES| miRBase hsa-mir-1271: 0.0001 PMRD no hits microPC no hits | UniProt no hits RFAM SNORA7: 0.0002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
