ABOUT THIS RECORDspecies: Lepeophtheirus salmonis
miRNA family: miR-2379
source: miRNEST
Taxonomy by NCBI:
Lepeophtheirus salmonis Lepeophtheirus Caligidae Siphonostomatoida Podoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCTGCTGGAGAAAATATTC miRNA* GTATTGCTCCGTCAATCATC mismatches: 5 bulges: 1 |
pre-miRNA
GGAACTCCGATGGCTGCTGGAGAAAATATTCCATCGACAGAGACTGTGACAACGTTTTTCGCTTTTACAGCTTGAATACGATGCCACTTTCCATCACAGA
GACTGAAAGTTGTTTTGGGTTTAAAGCTACTAAAAATAGGCCCTCTTCCATTATCTGCGGTGAATTGTATTGCTCCGTCAATCATCTGGAGAA
dot-bracket secondary structure
....(((((((((.((.(((((..(((((..(((((.((((...((.((...(((..((((((.....)))..))).)))..((.((((((..((.....
))..)))))).))...(((((((.............)))))))...))))...)))))))))....))))).))))).)).))))).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGAACTCCGATGGCTGCTGGAGAAAATATTCCATCGACAGAGACTGTGACAACGTTTTTCGCTTTTACAGCTTGAATACGATGCCACTTTCCATCACAGA
GACTGAAAGTTGTTTTGGGTTTAAAGCTACTAAAAATAGGCCCTCTTCCATTATCTGCGGTGAATTGTATTGCTCCGTCAATCATCTGGAGAA
dot-bracket secondary structure
....(((((((((.((.(((((..(((((..(((((.((((...((.((...(((..((((((.....)))..))).)))..((.((((((..((.....
))..)))))).))...(((((((.............)))))))...))))...)))))))))....))))).))))).)).))))).))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P25391|LAMA1_HUMAN: 0.0000000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
