miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lepeophtheirus salmonis, Caligus rogercresseyi, Lernaeocera branchialis, Caligus clemensi



ABOUT THIS RECORD

ID: MNEST007791
species: Lepeophtheirus salmonis
miRNA family: miR-2379
source: miRNEST

Taxonomy by NCBI:
Lepeophtheirus salmonis Lepeophtheirus Caligidae Siphonostomatoida Podoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGCTGCTGGAGAAAATATTC

miRNA*
GTATTGCTCCGTCAATCATC

mismatches: 5
bulges: 1

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pre-miRNA
GGAACTCCGATGGCTGCTGGAGAAAATATTCCATCGACAGAGACTGTGACAACGTTTTTCGCTTTTACAGCTTGAATACGATGCCACTTTCCATCACAGA
GACTGAAAGTTGTTTTGGGTTTAAAGCTACTAAAAATAGGCCCTCTTCCATTATCTGCGGTGAATTGTATTGCTCCGTCAATCATCTGGAGAA


dot-bracket secondary structure
....(((((((((.((.(((((..(((((..(((((.((((...((.((...(((..((((((.....)))..))).)))..((.((((((..((.....
))..)))))).))...(((((((.............)))))))...))))...)))))))))....))))).))))).)).))))).))))..



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|P25391|LAMA1_HUMAN: 0.0000000005

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





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