ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR827
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATGATCATCAACAAACA miRNA* TTTTGTTGCTGGTCATCTAGTC mismatches: 1 bulges: 1 |
pre-miRNA
GCTATGAATATGTTTTGTTGCTGGTCATCTAGTCATTGTTAGTCATGTTTAAAGCTCATGGCAGGATGATTAGATGATCATCAACAAACACATTCAGGA
dot-bracket secondary structure
....(((((.(((((.((((.((((((((((((((((....((((((.........))))))..)))))))))))))))).))))))))).)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GCTATGAATATGTTTTGTTGCTGGTCATCTAGTCATTGTTAGTCATGTTTAAAGCTCATGGCAGGATGATTAGATGATCATCAACAAACACATTCAGGA
dot-bracket secondary structure
....(((((.(((((.((((.((((((((((((((((....((((((.........))))))..)))))))))))))))).))))))))).)))))...
SIMILARITIES| miRBase osa-MIR827b: 0.00002 PMRD osa-miR827b: 0.00002 microPC miR827: 0.0003 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
