ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATCATGTGGCAGTTTCACC miRNA* TGAAGCTGCCAGCATGATCTAA mismatches: 1 bulges: 1 |
pre-miRNA
TCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCACC
TGTTGTTGGTAGCACAAGAAACCCTAA
dot-bracket secondary structure
.....((((.....((((((((.((.(((.(((((((((((.((((((((...(((..(((.......)))..)))...))))))))))))))))))).)
)).)).)))).)))).)))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCACC
TGTTGTTGGTAGCACAAGAAACCCTAA
dot-bracket secondary structure
.....((((.....((((((((.((.(((.(((((((((((.((((((((...(((..(((.......)))..)))...))))))))))))))))))).)
)).)).)))).)))).)))).......
SIMILARITIES| miRBase vvi-MIR167e: 7e-46 PMRD vvi-miR167e: 7e-46 microPC miR167: 0.000000000007 | UniProt no hits RFAM MIR167_1: 2e-46 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
