ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGGGAATGTTGTCTGGCTCGAGG mismatches: 3 bulges: 2 |
pre-miRNA
TATTGGGAAGCTTTATTTTGGGAGGGGAATGTTGTCTGGCTCGAGGACGCTTTCTTCTCGATCTAATGCAAATTTGTGGTCATGGATTGTAAAGTATTCT
CGGACCAGGCTTCATTCCCCCCAATTATATGCTTCCATGG
dot-bracket secondary structure
.....((((((..(((.(((((..(((((((..((((((.(((((((.(((((.....(((((((.((((....))))....))))))).))))).))))
))).))))))..))))))))))))..))).))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATTGGGAAGCTTTATTTTGGGAGGGGAATGTTGTCTGGCTCGAGGACGCTTTCTTCTCGATCTAATGCAAATTTGTGGTCATGGATTGTAAAGTATTCT
CGGACCAGGCTTCATTCCCCCCAATTATATGCTTCCATGG
dot-bracket secondary structure
.....((((((..(((.(((((..(((((((..((((((.(((((((.(((((.....(((((((.((((....))))....))))))).))))).))))
))).))))))..))))))))))))..))).))))))....
SIMILARITIES| miRBase mtr-MIR166g: 3e-54 PMRD mtr-miR166d: 1e-47 microPC miR166: 5e-50 | UniProt no hits RFAM mir-166: 6e-53 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
