ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR437
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGTTAGAGAAGTTTGACTT miRNA* GTCAAACTTCCTAACTTTGA mismatches: 1 bulges: 1 |
pre-miRNA
GTTTTGTACTAAGTCAAACTTCCTAACTTTGACTAAGTTCATATAAATCTGCACTAATATCTGCAACATCAAATTAATTTCACTAAATCTACCATGAGGT
ATTGTATATATTAATACATTTTTTCTCGAAACTTGATCTAAGTTAGAGAAGTTTGACTTAAGATAAAG
dot-bracket secondary structure
..(((((..((((((((((((((((((((.((.((((((.....((((.((...((((((.(((((.(((...........................)))
.))))).)))))).)).))))........)))))).)).))))))).)))))))))))))..))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GTTTTGTACTAAGTCAAACTTCCTAACTTTGACTAAGTTCATATAAATCTGCACTAATATCTGCAACATCAAATTAATTTCACTAAATCTACCATGAGGT
ATTGTATATATTAATACATTTTTTCTCGAAACTTGATCTAAGTTAGAGAAGTTTGACTTAAGATAAAG
dot-bracket secondary structure
..(((((..((((((((((((((((((((.((.((((((.....((((.((...((((((.(((((.(((...........................)))
.))))).)))))).)).))))........)))))).)).))))))).)))))))))))))..))))).
SIMILARITIES| miRBase sbi-MIR437b: 0.00000000004 PMRD sof-miR437: 0.000000000009 microPC miR437: 5e-81 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR437 from microPC (MNEST045012) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
