ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIRf1158
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCATTTGGAACGTGTAATTTT miRNA* AATTCCTACGTTCCAAACGGGT mismatches: 2 bulges: 1 |
pre-miRNA
ACATGAAGGCTCCATTTGGAACGTGTAATTTTTTTTGTTCCTGTGTTGTTTCTACAAAAAATAAAATAAATCCTAAAAAAACTATGGAATTCCAGTGAAA
TTCCTACGTTCCAAACGGGTCCAAATAT
dot-bracket secondary structure
.......((.(((.(((((((((((.((((((.((.(((((...(((.(((........................))).)))...)))))...)).))))
))..))))))))))).))).))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACATGAAGGCTCCATTTGGAACGTGTAATTTTTTTTGTTCCTGTGTTGTTTCTACAAAAAATAAAATAAATCCTAAAAAAACTATGGAATTCCAGTGAAA
TTCCTACGTTCCAAACGGGTCCAAATAT
dot-bracket secondary structure
.......((.(((.(((((((((((.((((((.((.(((((...(((.(((........................))).)))...)))))...)).))))
))..))))))))))).))).))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
