ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: miR160a
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTATGAGGAGCCATGCATA miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
GCATATGTGTAGTTGTATAAGATGTGTATGCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGAG
CCATGCATATTTTCATATACATTTACATACGTTT
dot-bracket secondary structure
.....(((((((.((((((.((...((((((.(((((((.((((((((((..((..((.(((((((...))))))).))....)))))))))))).))))
))).))))))..)).)))))).))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GCATATGTGTAGTTGTATAAGATGTGTATGCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGAG
CCATGCATATTTTCATATACATTTACATACGTTT
dot-bracket secondary structure
.....(((((((.((((((.((...((((((.(((((((.((((((((((..((..((.(((((((...))))))).))....)))))))))))).))))
))).))))))..)).)))))).))))))).....
SIMILARITIES| miRBase bra-MIR160a: 6e-68 PMRD bra-miR160a: 6e-68 microPC miR160: 3e-39 | UniProt no hits RFAM mir-160: 4e-20 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST046225) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
