ABOUT THIS RECORDspecies: Petromyzon marinus
miRNA family: miR-2445
source: miRNEST
Taxonomy by NCBI:
Petromyzon marinus Petromyzon Petromyzontidae Petromyzontiformes Hyperoartia Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTTTTCTCTTTTTTGTTTT miRNA* TTAAGGAAAGGCAAAAGGCAG mismatches: 4 bulges: 0 |
pre-miRNA
AGGCGGCCTTTTCTCTTTTTTGTTTTTGTCCAACCTGCGAATTTTGGAAGGGACCTTGTTTCCCCGCACCCCCTCCACCCCGTGGAGCAATGCATGCAAT
CCACTAACTTTTATTCACTTCCATGGAACGCCCGTTATGAATATTGTGAATATGGGCGTTTCTTTAACCTGAGAAATGTAGTTTCGCACAGATTAAGGAA
AGGCAAAAGGCAGTA
dot-bracket secondary structure
..((.(((((((.((((((((...(((((.......(((((...((((.(((....(((......))).))).))))....((((((((.....)))..)
))))..(((.((.((((.......(((((((((.((((((...))))))....))))))))).......)))).))...)))))))))))))...)))))
))).))))))).)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGGCGGCCTTTTCTCTTTTTTGTTTTTGTCCAACCTGCGAATTTTGGAAGGGACCTTGTTTCCCCGCACCCCCTCCACCCCGTGGAGCAATGCATGCAAT
CCACTAACTTTTATTCACTTCCATGGAACGCCCGTTATGAATATTGTGAATATGGGCGTTTCTTTAACCTGAGAAATGTAGTTTCGCACAGATTAAGGAA
AGGCAAAAGGCAGTA
dot-bracket secondary structure
..((.(((((((.((((((((...(((((.......(((((...((((.(((....(((......))).))).))))....((((((((.....)))..)
))))..(((.((.((((.......(((((((((.((((((...))))))....))))))))).......)))).))...)))))))))))))...)))))
))).))))))).)).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
