ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf532
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGAGCCAGACAACATTCCT miRNA* GAATGAAGCCTGGTCCGAGAA mismatches: 5 bulges: 0 |
pre-miRNA
GTAGCAAATGTTTGTTGGAAGGAATGAAGCCTGGTCCGAGAATCATCGAGGTACAAGATACACACAGACTTTGAATTTTCTCGGCTGTCATCAGGTAATG
CCATGTCTGTATAATCATGGCCTCAATGACCTCGAGCCAGACAACATTCCTCTCAACCTAACCCTCACG
dot-bracket secondary structure
.........(((.(((((.(((((((....(((((.((((..((((.(((((.....(((((.((((((.((((......))))..)))....(((...)
)).))).))))).......))))).)))).)))).)))))....))))))).)))))..))).......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAGCAAATGTTTGTTGGAAGGAATGAAGCCTGGTCCGAGAATCATCGAGGTACAAGATACACACAGACTTTGAATTTTCTCGGCTGTCATCAGGTAATG
CCATGTCTGTATAATCATGGCCTCAATGACCTCGAGCCAGACAACATTCCTCTCAACCTAACCCTCACG
dot-bracket secondary structure
.........(((.(((((.(((((((....(((((.((((..((((.(((((.....(((((.((((((.((((......))))..)))....(((...)
)).))).))))).......))))).)))).)))).)))))....))))))).)))))..))).......
SIMILARITIES| miRBase ptc-MIR166q: 4e-82 PMRD ptc-miR166q: 4e-82 microPC miR166: 0.0000001 | UniProt no hits RFAM mir-166: 1e-76 | most similar mature miRNAs |
Identical with: ptc-MIR166q from miRBase (MNEST041338) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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