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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST008880
species: Populus trichocarpa
miRNA family: MIRf532
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTCGAGCCAGACAACATTCCT

miRNA*
GAATGAAGCCTGGTCCGAGAA

mismatches: 5
bulges: 0

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pre-miRNA
GTAGCAAATGTTTGTTGGAAGGAATGAAGCCTGGTCCGAGAATCATCGAGGTACAAGATACACACAGACTTTGAATTTTCTCGGCTGTCATCAGGTAATG
CCATGTCTGTATAATCATGGCCTCAATGACCTCGAGCCAGACAACATTCCTCTCAACCTAACCCTCACG


dot-bracket secondary structure
.........(((.(((((.(((((((....(((((.((((..((((.(((((.....(((((.((((((.((((......))))..)))....(((...)
)).))).))))).......))))).)))).)))).)))))....))))))).)))))..))).......



SIMILARITIES
miRBase ptc-MIR166q: 4e-82

PMRD ptc-miR166q: 4e-82

microPC miR166: 0.0000001
UniProt no hits

RFAM mir-166: 1e-76
most similar mature miRNAs

Identical with: ptc-MIR166q from miRBase (MNEST041338)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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