miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST008921
species: Phaseolus vulgaris
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCGCCTTGCATCAACTGAAT

miRNA*
 TCGCTTGGTGCAGGTCGGGAA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TTCTATCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCTGTTTTTGCGCGAAATGGTGGAGTGGTTGCCGGCGGCGAATTGGATCCCGCCT
TGCATCAACTGAATCGGAGGCCGCAGTGAAGGTTT

dot-bracket secondary structure
..((.((((..((((((((((.(((((.((((((((((.(((((.((....(((((.((...((((((.....)))))).)))))))..)).))))).))
)))))))).))))).)))))))))))))).))...


SIMILARITIES
miRBase gma-MIR168: 4e-47

PMRD gma-miR168: 4e-47

microPC miR168: 1e-44		UniProt no hits

RFAM MIR168: 2e-18		most similar mature miRNAs

Identical with: miR168 from microPC (MNEST046663)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;